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Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression

Authors : Břinda, Karel; Lima, Leandro; Pignotti, Simone ...

Subjects: [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]

Source: https://hal.science/hal-04287842 ; 2023.

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Conference

Approximate String Matching Using a Bidirectional Index

Authors : Kucherov, Gregory; Salikhov, Kamil; Tsur, Dekel ...

Subjects: [INFO.INFO-DS]Computer Science [cs]/Data Structures and Algorithms [cs.DS]Moscow; Russia

Source: LNCS ; CPM 2014 ; https://hal.science/hal-01086206 ; CPM 2014, Jun 2014, Moscow, Russia. pp.222-231, ⟨10.1007/978-3-319-07566-2_23⟩

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Academic Journal

Using cascading Bloom filters to improve the memory usage for de Brujin graphs

Authors : Salikhov, Kamil; Sacomoto, Gustavo; Kucherov, Gregory ...

Subjects: [SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry; Molecular Biology/Molecular biology

Source: ISSN: 1748-7188 ; Algorithms for Molecular Biology ; https://inria.hal.science/hal-00971576 ; Algorithms for Molecular Biology, 2014, 9 (1), pp.2. ⟨10.1186/1748-7188-9-2⟩ ;

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Dissertation/ Thesis

Efficient algorithms and data structures for indexing DNA sequence data ; Algorithmes et structures de données efficaces pour l’indexation de séquences d’ADN

Authors : Salikhov, Kamil;

Subjects: Data structures; Algorithms; DNA sequence data

Source: https://pastel.hal.science/tel-01762479 ; Bioinformatics [q-bio.QM]. Université Paris-Est; Université Lomonossov (Moscou), 2017. English. ⟨NNT :

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